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{"id":7,"date":"2025-03-27T14:01:53","date_gmt":"2025-03-27T12:01:53","guid":{"rendered":"https:\/\/temu.bsc.es\/toxhabits\/?page_id=7"},"modified":"2025-06-17T17:27:18","modified_gmt":"2025-06-17T15:27:18","slug":"home","status":"publish","type":"page","link":"https:\/\/temu.bsc.es\/toxhabits\/","title":{"rendered":"Home"},"content":{"rendered":"\n<h1 class=\"wp-block-heading\">ToxHabits Shared Task Homepage<\/h1>\n\n\n\n<blockquote class=\"wp-block-quote is-layout-flow wp-block-quote-is-layout-flow\">\n<p><em><em>The ToxHabits Track <em>is organized by the Barcelona Supercomputing Center\u2019s NLP for Biomedical Information Analysis group<\/em> <em>and promoted<\/em> by Spanish and European projects such as DataTools4Heart, AI4HF and BARITONE.<\/em><\/em><\/p>\n<\/blockquote>\n\n\n\n<p><strong>To participate please see <a href=\"https:\/\/temu.bsc.es\/toxhabits\/registration\/\" target=\"_blank\" rel=\"noreferrer noopener\">Registration<\/a> page. <\/strong>If you are already registered, see the <a href=\"https:\/\/temu.bsc.es\/toxhabits\/data\/\" data-type=\"link\" data-id=\"https:\/\/temu.bsc.es\/toxhabits\/data\/\">Data<\/a> page to get the data for the task.<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">What is ToxHabits?<\/h2>\n\n\n\n<p><strong>ToxHabits<\/strong> is a shared task and set of resources focused on the detection and characterization of substance use and abuse in clinical texts.<\/p>\n\n\n\n<p>For more information about the <strong><strong>ToxHabits<\/strong><\/strong> task, check the <a href=\"https:\/\/temu.bsc.es\/toxhabits\/task-info\/\" target=\"_blank\" rel=\"noreferrer noopener\"><strong>Task Info<\/strong><\/a> tab, which includes the <a href=\"https:\/\/temu.bsc.es\/toxhabits\/motivation\/\" target=\"_blank\" rel=\"noreferrer noopener\"><strong>Motivation<\/strong><\/a>, <strong><a href=\"https:\/\/temu.bsc.es\/toxhabits\/subtasks\/\" target=\"_blank\" rel=\"noreferrer noopener\">Subtasks<\/a><\/strong>, <strong><a href=\"https:\/\/temu.bsc.es\/toxhabits\/schedule\/\" target=\"_blank\" rel=\"noreferrer noopener\">Schedule<\/a><\/strong>, <strong><a href=\"https:\/\/temu.bsc.es\/toxhabits\/registration\/\" target=\"_blank\" rel=\"noreferrer noopener\">Registration<\/a><\/strong> and <strong><a href=\"https:\/\/temu.bsc.es\/toxhabits\/submission\/\" target=\"_blank\" rel=\"noreferrer noopener\">Submission<\/a><\/strong> pages.<\/p>\n\n\n\n<p>To learn more about the <strong>ToxHabits corpus<\/strong> and how it was annotated, check the <strong><a href=\"https:\/\/temu.bsc.es\/toxhabits\/data\/\" target=\"_blank\" rel=\"noreferrer noopener\">Data<\/a><\/strong> tab.<\/p>\n\n\n\n<p>ToxHabits will be held as part of the <strong>BioCreative Workshop<\/strong> in the <strong>IJCAI 2025<\/strong> conference. For more information about them, check the <a href=\"https:\/\/temu.bsc.es\/toxhabits\/workshop\/\" data-type=\"link\" data-id=\"https:\/\/temu.bsc.es\/multicardioner\/workshop\/\" target=\"_blank\" rel=\"noreferrer noopener\"><strong>Workshop<\/strong><\/a> tab.<\/p>\n\n\n\n<p>ToxHabits is organized by the Barcelona Supercomputing Center&#8217;s NLP for Biomedical Information Analysis group (formerly Text Mining Unit).<\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Related resources<\/h2>\n\n\n\n<p>At the NLP for Biomedical Information Analysis group (formerly Text Mining Unit), one of our missions is the open publication of datasets to train and benchmark biomedical information extraction, normalization and indexing systems. For that reason, we have released multiple datasets as part of shared tasks over the years. If you are interested in ToxHabits, you might want to take a look at some of our resources and competitions about:<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Clinical content extraction: <a href=\"https:\/\/temu.bsc.es\/distemist\/\" target=\"_blank\" rel=\"noreferrer noopener\">DisTEMIST<\/a> (diseases), <a href=\"https:\/\/temu.bsc.es\/medprocner\/\">MedProcNER\/ProcTEMIST<\/a> (clinical procedures), <a href=\"https:\/\/temu.bsc.es\/symptemist\/\">SympTEMIST<\/a> (signs and findings), <a href=\"https:\/\/temu.bsc.es\/cantemist\/\" target=\"_blank\" rel=\"noreferrer noopener\">CANTEMIST<\/a> (tumour morphology), <a href=\"https:\/\/temu.bsc.es\/codiesp\/\" target=\"_blank\" rel=\"noreferrer noopener\">CodiEsp<\/a> (coding to ICD), <a href=\"https:\/\/temu.bsc.es\/pharmaconer\/\" target=\"_blank\" rel=\"noreferrer noopener\">PharmaCoNER<\/a> (chemicals and proteins), <a href=\"https:\/\/temu.bsc.es\/livingner\">LivingNER<\/a> (species and humans), <a href=\"https:\/\/temu.bsc.es\/multicardioner\/\">MultiCardioNER<\/a> (diseases and medications, includes the DrugTEMIST corpus as well as cardiology-specific data)<\/li>\n\n\n\n<li>Sociodemographic content extraction: <a href=\"https:\/\/temu.bsc.es\/meddoplace\/\" target=\"_blank\" rel=\"noreferrer noopener\">MEDDOPLACE<\/a> (locations and more) <a href=\"https:\/\/temu.bsc.es\/meddocan\/\" target=\"_blank\" rel=\"noreferrer noopener\">MEDDOCAN<\/a> (sensitive data), <a href=\"https:\/\/temu.bsc.es\/meddoprof\/\" target=\"_blank\" rel=\"noreferrer noopener\">MEDDOPROF<\/a> (occupations)<\/li>\n\n\n\n<li>Information extraction in social media: <a rel=\"noreferrer noopener\" href=\"https:\/\/temu.bsc.es\/socialdisner\/\" target=\"_blank\">SocialDisNER<\/a> (diseases), <a rel=\"noreferrer noopener\" href=\"https:\/\/temu.bsc.es\/smm4h-spanish\/\" target=\"_blank\">ProfNER<\/a> (occupations)<\/li>\n\n\n\n<li>Linguistic aspects: <a href=\"https:\/\/temu.bsc.es\/BARR\/\" target=\"_blank\" rel=\"noreferrer noopener\">BARR1<\/a> and <a href=\"https:\/\/temu.bsc.es\/BARR2\/\" target=\"_blank\" rel=\"noreferrer noopener\">BARR2<\/a> (abbreviation resolution)<\/li>\n\n\n\n<li>Machine Translation: <a href=\"https:\/\/temu.bsc.es\/clinspen\/\" data-type=\"URL\" data-id=\"https:\/\/temu.bsc.es\/clinspen\/\" target=\"_blank\" rel=\"noreferrer noopener\">ClinSpEn<\/a> (EN&lt;-&gt;ES clinical content translation)<\/li>\n\n\n\n<li>Clinical Text Summarization: <a href=\"https:\/\/temu.bsc.es\/multiclinsum\">MultiClinSum<\/a> (new this year!)<\/li>\n<\/ul>\n\n\n\n<h2 class=\"wp-block-heading\">Schedule<\/h2>\n\n\n\n<figure class=\"wp-block-table is-style-stripes\"><table class=\"has-fixed-layout\"><thead><tr><th><strong>Event<\/strong><\/th><th><strong>Date<\/strong> (Midnight CEST)<\/th><\/tr><\/thead><tbody><tr><td>ToxHabits <strong><a href=\"https:\/\/temu.bsc.es\/toxhabits\/registration\/\" data-type=\"page\" data-id=\"12\">registration<\/a><\/strong><\/td><td><\/td><\/tr><tr><td>ToxHabits Train set release (see <a href=\"https:\/\/temu.bsc.es\/toxhabits\/data\/\" data-type=\"page\" data-id=\"14\">Data<\/a>)<\/td><td>April 30th<\/td><\/tr><tr><td>Annotation Guidelines release<\/td><td>TBA<\/td><\/tr><tr><td>ToxHabits Test set release (see <a href=\"https:\/\/temu.bsc.es\/toxhabits\/data\/\" data-type=\"page\" data-id=\"14\">Data<\/a>)<\/td><td>May 26th<\/td><\/tr><tr><td>ToxHabits Test Prediction <strong><a href=\"https:\/\/temu.bsc.es\/toxhabits\/registration\/\" data-type=\"page\" data-id=\"12\"><\/a><strong><a href=\"https:\/\/temu.bsc.es\/toxhabits\/submission\/\" data-type=\"page\" data-id=\"13\">submission<\/a><\/strong><\/strong><\/td><td>June 9th (22:00 CET)<\/td><\/tr><tr><td>ToxHabits<strong><strong> <\/strong><\/strong>results release<\/td><td>June 10th<\/td><\/tr><tr><td>Early Registration (<a href=\"https:\/\/registration.ijcai.org\/\" data-type=\"link\" data-id=\"https:\/\/registration.ijcai.org\/\">IJCAI registration<\/a>)<\/td><td>June 15th <\/td><\/tr><tr><td>BioCreative IX proceedings <a href=\"https:\/\/chairingtool.com\/conferences\/BIOCREATIVE925\/main-track\" data-type=\"link\" data-id=\"https:\/\/chairingtool.com\/conferences\/BIOCREATIVE925\/main-track\">paper submission<\/a><\/td><td>June 23th<\/td><\/tr><tr><td>BioCreative IX proceedings paper reviews<\/td><td>June 27th<\/td><\/tr><tr><td>Notifications of revisions and workshop proceedings<\/td><td>July 2nd<\/td><\/tr><tr><td>IJCAI 2025<\/td><td>August 16th<\/td><\/tr><\/tbody><\/table><\/figure>\n\n\n\n<p>If you have any questions please contact the main organizers:<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Wesam Alnabki (wesam.alnabki.bsc [at] gmail [dot] com)<\/li>\n\n\n\n<li>Gabriel Vay\u00e1 Abad (gvaya.bsc [at] gmail [dot] com)<\/li>\n\n\n\n<li>Martin Krallinger (krallinger.martin [at] gmail [dot] com)<\/li>\n<\/ul>\n","protected":false},"excerpt":{"rendered":"<p>ToxHabits Shared Task Homepage The ToxHabits Track is organized by the Barcelona Supercomputing Center\u2019s NLP for Biomedical Information Analysis group and promoted by Spanish and European projects such as DataTools4Heart, AI4HF and BARITONE. To participate please see Registration page. If you are already registered, see the Data page to get the data for the task. [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-7","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/temu.bsc.es\/toxhabits\/wp-json\/wp\/v2\/pages\/7","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/temu.bsc.es\/toxhabits\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/temu.bsc.es\/toxhabits\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/temu.bsc.es\/toxhabits\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/temu.bsc.es\/toxhabits\/wp-json\/wp\/v2\/comments?post=7"}],"version-history":[{"count":30,"href":"https:\/\/temu.bsc.es\/toxhabits\/wp-json\/wp\/v2\/pages\/7\/revisions"}],"predecessor-version":[{"id":185,"href":"https:\/\/temu.bsc.es\/toxhabits\/wp-json\/wp\/v2\/pages\/7\/revisions\/185"}],"wp:attachment":[{"href":"https:\/\/temu.bsc.es\/toxhabits\/wp-json\/wp\/v2\/media?parent=7"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}