{"id":14,"date":"2023-07-11T09:12:27","date_gmt":"2023-07-11T09:12:27","guid":{"rendered":"https:\/\/temu.bsc.es\/symptemist\/?page_id=14"},"modified":"2023-10-06T10:56:49","modified_gmt":"2023-10-06T10:56:49","slug":"symptemist-homepage","status":"publish","type":"page","link":"https:\/\/temu.bsc.es\/symptemist\/","title":{"rendered":"SympTEMIST Homepage"},"content":{"rendered":"\n<h1 class=\"wp-block-heading\">SympTEMIST Shared Task Homepage<\/h1>\n\n\n\n<blockquote class=\"wp-block-quote is-layout-flow wp-block-quote-is-layout-flow\">\n<p><em>The SympTEMIST Track is organized by the Barcelona Supercomputing Center&#8217;s NLP for Biomedical Information Analysis group<\/em> <em>and promoted by<strong> <\/strong>Spanish and European projects such as DataTools4Heart, AI4HF, BARITONE and AI4ProfHealth.<\/em><\/p>\n\n\n\n<p><\/p>\n<\/blockquote>\n\n\n\n<h2 class=\"wp-block-heading\">What is SympTEMIST?<\/h2>\n\n\n\n<p><strong>SympTEMIST<\/strong> stands for SYMPtoms, signs and findings TExt MIning Shared Task . It is a shared task and set of resources focused on the detection and normalization of symptoms, signs and findings in medical documents in Spanish.<\/p>\n\n\n\n<p>For more information about the SympTEMIST task, check the <a href=\"https:\/\/temu.bsc.es\/symptemist\/task-info\/\" target=\"_blank\" rel=\"noreferrer noopener\"><strong>Task Info<\/strong><\/a> tab, which includes the <a href=\"https:\/\/temu.bsc.es\/symptemist\/motivation\/\" target=\"_blank\" rel=\"noreferrer noopener\"><strong>Motivation<\/strong><\/a>, <strong><a href=\"https:\/\/temu.bsc.es\/symptemist\/subtasks\/\" target=\"_blank\" rel=\"noreferrer noopener\">Subtasks<\/a><\/strong>, <strong><a href=\"https:\/\/temu.bsc.es\/symptemist\/schedule\/\" target=\"_blank\" rel=\"noreferrer noopener\">Schedule<\/a><\/strong>, <strong><a href=\"https:\/\/temu.bsc.es\/symptemist\/registration\/\" target=\"_blank\" rel=\"noreferrer noopener\">Registration<\/a><\/strong> and <strong><a href=\"https:\/\/temu.bsc.es\/symptemist\/submission\/\" target=\"_blank\" rel=\"noreferrer noopener\">Submission<\/a><\/strong> pages.<\/p>\n\n\n\n<p>To learn more about the SympTEMIST corpus and how it was annotated, check the <strong><a rel=\"noreferrer noopener\" href=\"https:\/\/temu.bsc.es\/symptemist\/data\/\" target=\"_blank\">Data<\/a><\/strong> tab, including the <strong><a rel=\"noreferrer noopener\" href=\"https:\/\/temu.bsc.es\/symptemist\/corpus-description\/\" target=\"_blank\">Corpus Description<\/a><\/strong>, <a rel=\"noreferrer noopener\" href=\"https:\/\/temu.bsc.es\/symptemist\/annotation-guidelines\/\" target=\"_blank\"><strong>Annotation Guidelines<\/strong><\/a> (with example annotations and screenshots) and <strong><a href=\"https:\/\/temu.bsc.es\/symptemist\/download\/\" target=\"_blank\" rel=\"noreferrer noopener\">Download<\/a><\/strong> pages.<\/p>\n\n\n\n<p>SympTEMIST will be held as part of <strong>BioCreative 2023<\/strong>. For more information about it, check the <a rel=\"noreferrer noopener\" href=\"https:\/\/temu.bsc.es\/symptemist\/workshop\/\" target=\"_blank\"><strong>Workshop<\/strong><\/a> tab.<\/p>\n\n\n\n<p>SympTEMIST is organized by the Barcelona Supercomputing Center&#8217;s NLP for Biomedical Information Analysis group (formerly Text Mining Unit). <\/p>\n\n\n\n<figure class=\"wp-block-image size-large\"><img loading=\"lazy\" decoding=\"async\" width=\"870\" height=\"1024\" src=\"https:\/\/temu.bsc.es\/symptemist\/wp-content\/uploads\/2023\/09\/symtemist_figura_overview_v1-1-870x1024.png\" alt=\"\" class=\"wp-image-145\" srcset=\"https:\/\/temu.bsc.es\/symptemist\/wp-content\/uploads\/2023\/09\/symtemist_figura_overview_v1-1-870x1024.png 870w, https:\/\/temu.bsc.es\/symptemist\/wp-content\/uploads\/2023\/09\/symtemist_figura_overview_v1-1-255x300.png 255w, https:\/\/temu.bsc.es\/symptemist\/wp-content\/uploads\/2023\/09\/symtemist_figura_overview_v1-1-768x904.png 768w, https:\/\/temu.bsc.es\/symptemist\/wp-content\/uploads\/2023\/09\/symtemist_figura_overview_v1-1-1305x1536.png 1305w, https:\/\/temu.bsc.es\/symptemist\/wp-content\/uploads\/2023\/09\/symtemist_figura_overview_v1-1-1739x2048.png 1739w\" sizes=\"auto, (max-width: 870px) 100vw, 870px\" \/><\/figure>\n\n\n\n<p><\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Important information<\/h2>\n\n\n\n<p><\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>The corpus&#8217; training set, multilingual silver standard and gazetteer, as well as the test set for all subtasks are now available on <a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.5281\/zenodo.8223653\" target=\"_blank\">Zenodo<\/a>.<\/li>\n\n\n\n<li>Submission information now available on the <a href=\"https:\/\/temu.bsc.es\/symptemist\/submission\/\">Submission<\/a> page.<\/li>\n<\/ul>\n\n\n\n<p><\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Related resources<\/h2>\n\n\n\n<p>At the NLP for Biomedical Information Analysis group (formerly Text Mining Unit), one of our missions is the open publication of datasets to train and benchmark biomedical information extraction, normalization and indexing systems. For that reason, we have released multiple datasets as part of shared tasks over the years. If you are interested in SympTEMIST, you might want to take a look at some of our resources and competitions about:<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Clinical content extraction: <a rel=\"noreferrer noopener\" href=\"https:\/\/temu.bsc.es\/distemist\/\" target=\"_blank\">DisTEMIST<\/a> (diseases), <a href=\"https:\/\/temu.bsc.es\/medprocner\/\" target=\"_blank\" rel=\"noreferrer noopener\">MedProcNER\/ProcTEMIST<\/a> (clinical procedures), <a rel=\"noreferrer noopener\" href=\"https:\/\/temu.bsc.es\/cantemist\/\" target=\"_blank\">CANTEMIST<\/a> (tumour morphology), <a rel=\"noreferrer noopener\" href=\"https:\/\/temu.bsc.es\/codiesp\/\" target=\"_blank\">CodiEsp<\/a> (coding to ICD), <a rel=\"noreferrer noopener\" href=\"https:\/\/temu.bsc.es\/pharmaconer\/\" target=\"_blank\">PharmaCoNER<\/a> (chemicals and proteins)<\/li>\n\n\n\n<li>Sociodemographic content extraction: <a rel=\"noreferrer noopener\" href=\"https:\/\/temu.bsc.es\/meddoplace\/\" target=\"_blank\">MEDDOPLACE<\/a> (locations and clinical departments) <a rel=\"noreferrer noopener\" href=\"https:\/\/temu.bsc.es\/meddocan\/\" target=\"_blank\">MEDDOCAN<\/a> (sensitive data), <a rel=\"noreferrer noopener\" href=\"https:\/\/temu.bsc.es\/meddoprof\/\" target=\"_blank\">MEDDOPROF<\/a> (occupations)<\/li>\n\n\n\n<li>Information extraction in social media: <a rel=\"noreferrer noopener\" href=\"https:\/\/temu.bsc.es\/socialdisner\/\" target=\"_blank\">SocialDisNER<\/a> (diseases), <a rel=\"noreferrer noopener\" href=\"https:\/\/temu.bsc.es\/smm4h-spanish\/\" target=\"_blank\">ProfNER<\/a> (occupations)<\/li>\n\n\n\n<li>Linguistic aspects: <a href=\"https:\/\/temu.bsc.es\/BARR\/\" target=\"_blank\" rel=\"noreferrer noopener\">BARR1<\/a> and <a href=\"https:\/\/temu.bsc.es\/BARR2\/\" target=\"_blank\" rel=\"noreferrer noopener\">BARR2<\/a> (abbreviation resolution)<\/li>\n\n\n\n<li>Machine Translation: <a href=\"https:\/\/temu.bsc.es\/clinspen\/\" data-type=\"URL\" data-id=\"https:\/\/temu.bsc.es\/clinspen\/\" target=\"_blank\" rel=\"noreferrer noopener\">ClinSpEn<\/a> (EN&lt;-&gt;ES clinical content translation)<\/li>\n<\/ul>\n\n\n\n<h2 class=\"wp-block-heading\">Schedule<\/h2>\n\n\n\n<table id=\"tablepress-1\" class=\"tablepress tablepress-id-1\">\n<thead>\n<tr class=\"row-1 odd\">\n\t<th class=\"column-1\">Event<\/th><th class=\"column-2\">Date (Midnight CEST)<\/th>\n<\/tr>\n<\/thead>\n<tbody class=\"row-hover\">\n<tr class=\"row-2 even\">\n\t<td class=\"column-1\"><a href=\"https:\/\/zenodo.org\/record\/8246440\">SympTEMIST Annotation Guidelines Release<\/a><\/td><td class=\"column-2\">August 8th 2023<\/td>\n<\/tr>\n<tr class=\"row-3 odd\">\n\t<td class=\"column-1\"><a href=\"https:\/\/zenodo.org\/record\/8223654\">SympTEMIST Train Set Subtask 1 (NER) Release <\/a><\/td><td class=\"column-2\">August 8th, 2023<\/td>\n<\/tr>\n<tr class=\"row-4 even\">\n\t<td class=\"column-1\"><a href=\"https:\/\/doi.org\/10.5281\/zenodo.8223653\">SympTEMIST Train Set Subtask 2 + 3 (Linking + Multilingual) Release<\/a><\/td><td class=\"column-2\">September 12th, 2023<\/td>\n<\/tr>\n<tr class=\"row-5 odd\">\n\t<td class=\"column-1\"><a href=\"https:\/\/doi.org\/10.5281\/zenodo.8223653\">SympTEMIST Gazetteer Release<\/a><\/td><td class=\"column-2\">September 12th, 2023<\/td>\n<\/tr>\n<tr class=\"row-6 even\">\n\t<td class=\"column-1\"><a href=\"https:\/\/doi.org\/10.5281\/zenodo.8223653\">SympTEMIST Subtask 1 (NER) Test Set Release<\/a><\/td><td class=\"column-2\">September 30th 2023<\/td>\n<\/tr>\n<tr class=\"row-7 odd\">\n\t<td class=\"column-1\">Subtask 1 (NER) Test Predictions Deadline<\/td><td class=\"column-2\">October 6th 2023<\/td>\n<\/tr>\n<tr class=\"row-8 even\">\n\t<td class=\"column-1\">Subtask 1 (NER) Evaluation Results Release<\/td><td class=\"column-2\">October 10th  2023<\/td>\n<\/tr>\n<tr class=\"row-9 odd\">\n\t<td class=\"column-1\">SympTEMIST Subtask 2 + 3 (Linking + Multilingual) Test Set Release<\/td><td class=\"column-2\">October 6th 2023<\/td>\n<\/tr>\n<tr class=\"row-10 even\">\n\t<td class=\"column-1\">Subtask 2 + 3 (Linking + Multilingual) Test Predictions Deadline<\/td><td class=\"column-2\">October 13th 2023<\/td>\n<\/tr>\n<tr class=\"row-11 odd\">\n\t<td class=\"column-1\">Subtask 2 + 3 (Linking + Multilingual) Evaluation Release<\/td><td class=\"column-2\">October 17th 2023<\/td>\n<\/tr>\n<tr class=\"row-12 even\">\n\t<td class=\"column-1\">Submission of Participant Papers Deadline<\/td><td class=\"column-2\">October 22nd  2023<\/td>\n<\/tr>\n<tr class=\"row-13 odd\">\n\t<td class=\"column-1\">Notification of Acceptance Participant Papers<\/td><td class=\"column-2\">October 30th  2023<\/td>\n<\/tr>\n<tr class=\"row-14 even\">\n\t<td class=\"column-1\">Submission of Camera-ready Participant Papers Deadline<\/td><td class=\"column-2\">November 3rd 2023<\/td>\n<\/tr>\n<tr class=\"row-15 odd\">\n\t<td class=\"column-1\">BioCreative VIII @ AMIA 2023<\/td><td class=\"column-2\">November 11-15 2023<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<!-- #tablepress-1 from cache -->\n","protected":false},"excerpt":{"rendered":"<p>SympTEMIST Shared Task Homepage The SympTEMIST Track is organized by the Barcelona Supercomputing Center&#8217;s NLP for Biomedical Information Analysis group and promoted by Spanish and European projects such as DataTools4Heart, AI4HF, BARITONE and AI4ProfHealth. What is SympTEMIST? SympTEMIST stands for SYMPtoms, signs and findings TExt MIning Shared Task . It is a shared task and [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-14","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/temu.bsc.es\/symptemist\/wp-json\/wp\/v2\/pages\/14","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/temu.bsc.es\/symptemist\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/temu.bsc.es\/symptemist\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/temu.bsc.es\/symptemist\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/temu.bsc.es\/symptemist\/wp-json\/wp\/v2\/comments?post=14"}],"version-history":[{"count":10,"href":"https:\/\/temu.bsc.es\/symptemist\/wp-json\/wp\/v2\/pages\/14\/revisions"}],"predecessor-version":[{"id":183,"href":"https:\/\/temu.bsc.es\/symptemist\/wp-json\/wp\/v2\/pages\/14\/revisions\/183"}],"wp:attachment":[{"href":"https:\/\/temu.bsc.es\/symptemist\/wp-json\/wp\/v2\/media?parent=14"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}