{"id":52,"date":"2024-03-25T09:40:18","date_gmt":"2024-03-25T09:40:18","guid":{"rendered":"https:\/\/temu.bsc.es\/multicardioner\/?page_id=52"},"modified":"2024-09-09T08:49:22","modified_gmt":"2024-09-09T08:49:22","slug":"home","status":"publish","type":"page","link":"https:\/\/temu.bsc.es\/multicardioner\/","title":{"rendered":"Home"},"content":{"rendered":"\n<h1 class=\"wp-block-heading\">MultiCardioNER Shared Task Homepage<\/h1>\n\n\n\n<blockquote class=\"wp-block-quote is-layout-flow wp-block-quote-is-layout-flow\">\n<p><em><em>The MultiCardioNER Track  <em>is organized by the Barcelona Supercomputing Center\u2019s NLP for Biomedical Information Analysis group<\/em> <em>and promoted<\/em> by Spanish and European projects such as <\/em><em>DataTools4Heart, AI4HF, BARITONE and AI4ProfHealth.<\/em><\/em><\/p>\n<\/blockquote>\n\n\n\n<blockquote class=\"wp-block-quote is-layout-flow wp-block-quote-is-layout-flow\">\n<p>Overview of MultiCardioNER task at BioASQ 2024 on Medical Specialty and Language Adaptation of Clinical NER Systems for Spanish, English and Italian. Salvador Lima-L\u00f3pez, Eulalia Farre-Maduell, Jan Rodr\u00edguez-Miret, Miguel Rodr\u00edguez-Ortega, Livia Lilli, Jacopo Lenkowicz, Giovanna Ceroni, Jonathan Kossof, Anoop Shah, Anastasios Nentidis, Anastasia Krithara, Georgios Katsimpras, Georgios Paliouras, Martin Krallinger. Working Notes of CLEF, 2024, pp. 8-27. URL: <a href=\"https:\/\/ceur-ws.org\/Vol-3740\/paper-02.pdf\">https:\/\/ceur-ws.org\/Vol-3740\/paper-02.pdf<\/a><\/p>\n<\/blockquote>\n\n\n\n<h2 class=\"wp-block-heading\">What is MultiCardioNER?<\/h2>\n\n\n\n<p><strong>MultiCardioNER<\/strong>  is a shared task and set of resources focused on the multilingual adaptation of clinical NER systems to the cardiology domain.<\/p>\n\n\n\n<p>For more information about the MultiCardioNER task, check the <a href=\"https:\/\/temu.bsc.es\/multicardioner\/task-info\/\" target=\"_blank\" rel=\"noreferrer noopener\"><strong>Task Info<\/strong><\/a> tab, which includes the <a href=\"https:\/\/temu.bsc.es\/multicardioner\/motivation\/\" target=\"_blank\" rel=\"noreferrer noopener\"><strong>Motivation<\/strong><\/a>, <strong><a href=\"https:\/\/temu.bsc.es\/multicardioner\/subtasks\/\" target=\"_blank\" rel=\"noreferrer noopener\">Subtasks<\/a><\/strong>, <strong><a href=\"https:\/\/temu.bsc.es\/multicardioner\/schedule\/\" target=\"_blank\" rel=\"noreferrer noopener\">Schedule<\/a><\/strong>, <strong><a href=\"https:\/\/temu.bsc.es\/multicardioner\/registration\/\" target=\"_blank\" rel=\"noreferrer noopener\">Registration<\/a><\/strong> and <strong><a href=\"https:\/\/temu.bsc.es\/multicardioner\/submission\/\" target=\"_blank\" rel=\"noreferrer noopener\">Submission<\/a><\/strong> pages.<\/p>\n\n\n\n<p>To learn more about the MultiCardioNER corpus and how it was annotated, check the <strong><a href=\"https:\/\/temu.bsc.es\/multicardioner\/data\/\" target=\"_blank\" rel=\"noreferrer noopener\">Data<\/a><\/strong> tab, including the <strong><a href=\"https:\/\/temu.bsc.es\/multicardioner\/corpus-description\/\" target=\"_blank\" rel=\"noreferrer noopener\">Corpus Description<\/a><\/strong>, <a href=\"https:\/\/temu.bsc.es\/multicardioner\/annotation-guidelines\/\" target=\"_blank\" rel=\"noreferrer noopener\"><strong>Annotation Guidelines<\/strong><\/a> and <strong><a href=\"https:\/\/temu.bsc.es\/multicardioner\/download\/\" target=\"_blank\" rel=\"noreferrer noopener\">Download<\/a><\/strong> pages.<\/p>\n\n\n\n<p>MultiCardioNER will be held as part of the <strong>BioASQ Workshop<\/strong> in the <strong>CLEF 2024<\/strong> conference. For more information about them, check the <a href=\"https:\/\/temu.bsc.es\/multicardioner\/workshop\/\" data-type=\"link\" data-id=\"https:\/\/temu.bsc.es\/multicardioner\/workshop\/\" target=\"_blank\" rel=\"noreferrer noopener\"><strong>Workshop<\/strong><\/a> tab.<\/p>\n\n\n\n<p>MultiCardioNER is organized by the Barcelona Supercomputing Center&#8217;s NLP for Biomedical Information Analysis group (formerly Text Mining Unit). <\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Important information<\/h2>\n\n\n\n<ul class=\"wp-block-list\">\n<li>The BioASQ Proceedings are now available! <a href=\"https:\/\/temu.bsc.es\/multicardioner\/publications\/\">https:\/\/temu.bsc.es\/multicardioner\/publications\/<\/a><\/li>\n\n\n\n<li>The MultiCardioNER complete dataset is out now! <a href=\"https:\/\/zenodo.org\/doi\/10.5281\/zenodo.10948354\">https:\/\/zenodo.org\/doi\/10.5281\/zenodo.10948354<\/a><\/li>\n\n\n\n<li>The DrugTEMIST Annotation Guidelines are now live! <a href=\"https:\/\/zenodo.org\/records\/11065433\">https:\/\/zenodo.org\/records\/11065433<\/a><\/li>\n\n\n\n<li>The task&#8217;s evaluation library is now available on GitHub <a href=\"https:\/\/github.com\/nlp4bia-bsc\/multicardioner_evaluation_library\">https:\/\/github.com\/nlp4bia-bsc\/multicardioner_evaluation_library<\/a><\/li>\n<\/ul>\n\n\n\n<h2 class=\"wp-block-heading\">Related resources<\/h2>\n\n\n\n<p>At the NLP for Biomedical Information Analysis group (formerly Text Mining Unit), one of our missions is the open publication of datasets to train and benchmark biomedical information extraction, normalization and indexing systems. For that reason, we have released multiple datasets as part of shared tasks over the years. If you are interested in MultiCardioNER, you might want to take a look at some of our resources and competitions about:<\/p>\n\n\n\n<ul class=\"wp-block-list\">\n<li>Clinical content extraction: <a href=\"https:\/\/temu.bsc.es\/distemist\/\" target=\"_blank\" rel=\"noreferrer noopener\">DisTEMIST<\/a> (diseases), <a href=\"https:\/\/temu.bsc.es\/medprocner\/\">MedProcNER\/ProcTEMIST<\/a> (clinical procedures), <a href=\"https:\/\/temu.bsc.es\/symptemist\/\">SympTEMIST<\/a> (signs and findings), <a href=\"https:\/\/temu.bsc.es\/cantemist\/\" target=\"_blank\" rel=\"noreferrer noopener\">CANTEMIST<\/a> (tumour morphology), <a href=\"https:\/\/temu.bsc.es\/codiesp\/\" target=\"_blank\" rel=\"noreferrer noopener\">CodiEsp<\/a> (coding to ICD), <a href=\"https:\/\/temu.bsc.es\/pharmaconer\/\" target=\"_blank\" rel=\"noreferrer noopener\">PharmaCoNER<\/a> (chemicals and proteins), <a href=\"https:\/\/temu.bsc.es\/livingner\">LivingNER<\/a> (species and humans)<\/li>\n\n\n\n<li>Sociodemographic content extraction: <a href=\"https:\/\/temu.bsc.es\/meddoplace\/\" target=\"_blank\" rel=\"noreferrer noopener\">MEDDOPLACE<\/a> (locations and more) <a href=\"https:\/\/temu.bsc.es\/meddocan\/\" target=\"_blank\" rel=\"noreferrer noopener\">MEDDOCAN<\/a> (sensitive data), <a href=\"https:\/\/temu.bsc.es\/meddoprof\/\" target=\"_blank\" rel=\"noreferrer noopener\">MEDDOPROF<\/a> (occupations)<\/li>\n\n\n\n<li>Information extraction in social media: <a rel=\"noreferrer noopener\" href=\"https:\/\/temu.bsc.es\/socialdisner\/\" target=\"_blank\">SocialDisNER<\/a> (diseases), <a rel=\"noreferrer noopener\" href=\"https:\/\/temu.bsc.es\/smm4h-spanish\/\" target=\"_blank\">ProfNER<\/a> (occupations)<\/li>\n\n\n\n<li>Linguistic aspects: <a href=\"https:\/\/temu.bsc.es\/BARR\/\" target=\"_blank\" rel=\"noreferrer noopener\">BARR1<\/a> and <a href=\"https:\/\/temu.bsc.es\/BARR2\/\" target=\"_blank\" rel=\"noreferrer noopener\">BARR2<\/a> (abbreviation resolution)<\/li>\n\n\n\n<li>Machine Translation: <a href=\"https:\/\/temu.bsc.es\/clinspen\/\" data-type=\"URL\" data-id=\"https:\/\/temu.bsc.es\/clinspen\/\" target=\"_blank\" rel=\"noreferrer noopener\">ClinSpEn<\/a> (EN&lt;-&gt;ES clinical content translation)<\/li>\n<\/ul>\n\n\n\n<h2 class=\"wp-block-heading\">Schedule<\/h2>\n\n\n\n<table id=\"tablepress-1\" class=\"tablepress tablepress-id-1\">\n<thead>\n<tr class=\"row-1 odd\">\n\t<th class=\"column-1\">Event<\/th><th class=\"column-2\">Date (Midnight CEST)<\/th>\n<\/tr>\n<\/thead>\n<tbody class=\"row-hover\">\n<tr class=\"row-2 even\">\n\t<td class=\"column-1\"><a href=\"https:\/\/zenodo.org\/doi\/10.5281\/zenodo.10948354\">MultiCardioNER Train+Dev Set Release<\/a><\/td><td class=\"column-2\">April 9th, 2024<\/td>\n<\/tr>\n<tr class=\"row-3 odd\">\n\t<td class=\"column-1\"><a href=\"https:\/\/zenodo.org\/records\/11065433\">DrugTEMIST Annotation Guidelines Release<\/a><\/td><td class=\"column-2\">April 25th, 2024<\/td>\n<\/tr>\n<tr class=\"row-4 even\">\n\t<td class=\"column-1\"><a href=\"https:\/\/zenodo.org\/doi\/10.5281\/zenodo.10948354\">MultiCardioNER Test Set Texts Release<\/a><\/td><td class=\"column-2\">May 2nd, 2024<\/td>\n<\/tr>\n<tr class=\"row-5 odd\">\n\t<td class=\"column-1\">Participant Test Predictions Deadline <br \/>\n<\/td><td class=\"column-2\">May 19th, 2024, End of Day, AoE<\/td>\n<\/tr>\n<tr class=\"row-6 even\">\n\t<td class=\"column-1\">Participant Evaluation Result Release<\/td><td class=\"column-2\">May 23rd, 2024<\/td>\n<\/tr>\n<tr class=\"row-7 odd\">\n\t<td class=\"column-1\">Submission of Participant Papers Deadline<\/td><td class=\"column-2\">June 10th, 2024<\/td>\n<\/tr>\n<tr class=\"row-8 even\">\n\t<td class=\"column-1\">Notification of Acceptance of Participant Papers<\/td><td class=\"column-2\">June 24th, 2024<\/td>\n<\/tr>\n<tr class=\"row-9 odd\">\n\t<td class=\"column-1\">Submission of Camera-ready Participant Papers Deadline<\/td><td class=\"column-2\">July 7th, 2024<\/td>\n<\/tr>\n<tr class=\"row-10 even\">\n\t<td class=\"column-1\">BioASQ @ CLEF2024<\/td><td class=\"column-2\">September 9th-12th, 2024<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<!-- #tablepress-1 from cache -->\n","protected":false},"excerpt":{"rendered":"<p>MultiCardioNER Shared Task Homepage The MultiCardioNER Track is organized by the Barcelona Supercomputing Center\u2019s NLP for Biomedical Information Analysis group and promoted by Spanish and European projects such as DataTools4Heart, AI4HF, BARITONE and AI4ProfHealth. Overview of MultiCardioNER task at BioASQ 2024 on Medical Specialty and Language Adaptation of Clinical NER Systems for Spanish, English and [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-52","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/temu.bsc.es\/multicardioner\/wp-json\/wp\/v2\/pages\/52","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/temu.bsc.es\/multicardioner\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/temu.bsc.es\/multicardioner\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/temu.bsc.es\/multicardioner\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/temu.bsc.es\/multicardioner\/wp-json\/wp\/v2\/comments?post=52"}],"version-history":[{"count":15,"href":"https:\/\/temu.bsc.es\/multicardioner\/wp-json\/wp\/v2\/pages\/52\/revisions"}],"predecessor-version":[{"id":160,"href":"https:\/\/temu.bsc.es\/multicardioner\/wp-json\/wp\/v2\/pages\/52\/revisions\/160"}],"wp:attachment":[{"href":"https:\/\/temu.bsc.es\/multicardioner\/wp-json\/wp\/v2\/media?parent=52"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}