{"id":17,"date":"2022-01-28T16:09:59","date_gmt":"2022-01-28T15:09:59","guid":{"rendered":"https:\/\/temu.bsc.es\/livingner\/?p=17"},"modified":"2022-04-06T13:36:58","modified_gmt":"2022-04-06T12:36:58","slug":"resources","status":"publish","type":"post","link":"https:\/\/temu.bsc.es\/livingner\/2022\/01\/28\/resources\/","title":{"rendered":"Resources"},"content":{"rendered":"\n<h2 class=\"wp-block-heading\">LivingNER Resources<\/h2>\n\n\n\n<h4 class=\"wp-block-heading\">LivingNER terminology &#8211; codes Reference List<\/h4>\n\n\n\n<ul class=\"wp-block-list\"><li>Reference list with all valid codes from NCBI Taxonomy with the terms translated to Spanish. It is a .tsv file. Available in Z<a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.5281\/zenodo.6390506\" target=\"_blank\">enodo<\/a><\/li><\/ul>\n\n\n\n<h4 class=\"wp-block-heading\">LivingNER evaluation script<\/h4>\n\n\n\n<ul class=\"wp-block-list\"><li><a rel=\"noreferrer noopener\" href=\"https:\/\/github.com\/tonifuc3m\/livingner-evaluation-library\" target=\"_blank\">Offical evaluation script<\/a><\/li><\/ul>\n\n\n\n<p><\/p>\n\n\n\n<h2 class=\"wp-block-heading\">Other Resources<\/h2>\n\n\n\n<h4 class=\"wp-block-heading\">Word embeddings<\/h4>\n\n\n\n<ul class=\"wp-block-list\"><li><strong>Spanish Medical Word Embeddings.<\/strong>&nbsp;Word embeddings generated from Spanish medical corpora.&nbsp;<a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.5281\/zenodo.2542721\" target=\"_blank\">Download them from Zenodo.<\/a><br>It can be used as a building block for clinical NLP systems used in Spanish texts.<\/li><\/ul>\n\n\n\n<p><\/p>\n\n\n\n<h4 class=\"wp-block-heading\">Linguistic Resources<\/h4>\n\n\n\n<ul class=\"wp-block-list\"><li><strong>CUTEXT.<\/strong>&nbsp;<a rel=\"noreferrer noopener\" href=\"https:\/\/github.com\/PlanTL-SANIDAD\/CUTEXT\" target=\"_blank\">See it on GitHub.<\/a><br>Medical term extraction tool.<br>It can be used to extract relevant medical terms from clinical cases.<\/li><li><strong>SPACCC POS Tagger.<\/strong>&nbsp;<a rel=\"noreferrer noopener\" href=\"https:\/\/zenodo.org\/record\/2560344\" target=\"_blank\">See it on Zenodo<\/a>.<br>Part Of Speech Tagger for Spanish medical domain corpus.<br>It can be used as a component of your system.<\/li><li><strong>NegEx-MES<\/strong>.&nbsp;<a rel=\"noreferrer noopener\" href=\"https:\/\/zenodo.org\/record\/2542567\" target=\"_blank\">See it on Zenodo.<\/a><br>A system for negation detection in Spanish clinical texts based on NegEx algorithm.<br>It can be used as a component of your system.<\/li><li><strong>Negation corpus<\/strong>.&nbsp;<a rel=\"noreferrer noopener\" href=\"https:\/\/github.com\/Vicomtech\/NUBes-negation-uncertainty-biomedical-corpus\" target=\"_blank\">See it on GitHub<\/a><br>A Corpus of Negation and Uncertainty in Spanish Clinical Texts (and instructions to train the system).<\/li><li><strong>AbreMES-X.<\/strong>&nbsp;<a rel=\"noreferrer noopener\" href=\"https:\/\/zenodo.org\/record\/2542555\" target=\"_blank\">See it on Zenodo.<\/a><br>Software used to generate the Spanish Medical Abbreviation DataBase.<\/li><li><strong>AbreMES-DB.<\/strong>&nbsp;<a rel=\"noreferrer noopener\" href=\"https:\/\/zenodo.org\/record\/2207130\" target=\"_blank\">See it on Zenodo.<\/a><br>Spanish Medical Abbreviation DataBase.<br>It can be used to fine-tune your system.<\/li><li><strong>MeSpEn Glossaries<\/strong>.&nbsp;<a rel=\"noreferrer noopener\" href=\"https:\/\/zenodo.org\/record\/2205690\" target=\"_blank\">See it on Zenodo.<\/a><br>Repository of bilingual medical glossaries made by professional translators.<br>It can be used to fine-tune your system.<\/li><\/ul>\n","protected":false},"excerpt":{"rendered":"<p>LivingNER Resources LivingNER terminology &#8211; codes Reference List Reference list with all valid codes from NCBI Taxonomy with the terms translated to Spanish. It is a .tsv file. Available in Zenodo LivingNER evaluation script Offical evaluation script Other Resources Word embeddings Spanish Medical Word Embeddings.&nbsp;Word embeddings generated from Spanish medical corpora.&nbsp;Download them from Zenodo.It can [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[4],"tags":[],"class_list":["post-17","post","type-post","status-publish","format-standard","hentry","category-data"],"_links":{"self":[{"href":"https:\/\/temu.bsc.es\/livingner\/wp-json\/wp\/v2\/posts\/17","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/temu.bsc.es\/livingner\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/temu.bsc.es\/livingner\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/temu.bsc.es\/livingner\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/temu.bsc.es\/livingner\/wp-json\/wp\/v2\/comments?post=17"}],"version-history":[{"count":9,"href":"https:\/\/temu.bsc.es\/livingner\/wp-json\/wp\/v2\/posts\/17\/revisions"}],"predecessor-version":[{"id":292,"href":"https:\/\/temu.bsc.es\/livingner\/wp-json\/wp\/v2\/posts\/17\/revisions\/292"}],"wp:attachment":[{"href":"https:\/\/temu.bsc.es\/livingner\/wp-json\/wp\/v2\/media?parent=17"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/temu.bsc.es\/livingner\/wp-json\/wp\/v2\/categories?post=17"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/temu.bsc.es\/livingner\/wp-json\/wp\/v2\/tags?post=17"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}