{"id":3979,"date":"2019-09-19T12:38:57","date_gmt":"2019-09-19T12:38:57","guid":{"rendered":"http:\/\/temu.bsc.es\/meddocan\/?p=3979"},"modified":"2022-04-13T14:22:33","modified_gmt":"2022-04-13T13:22:33","slug":"resources","status":"publish","type":"post","link":"https:\/\/temu.bsc.es\/distemist\/resources\/","title":{"rendered":"Resources"},"content":{"rendered":"\n<h3 class=\"wp-block-heading\">DISTEMIST gazetteer<\/h3>\n\n\n\n<ul class=\"wp-block-list\"><li><strong>DISTEMIST gazetteer<\/strong>: contains main terms and synonyms from the relevant branches of Snomed-CT for the grounding of disease mentions. Relevant for NER and Entity linking. Find it on <a href=\"https:\/\/doi.org\/10.5281\/zenodo.6458114\" target=\"_blank\" rel=\"noreferrer noopener\">Zenodo<\/a>.<\/li><\/ul>\n\n\n\n<h3 class=\"wp-block-heading\" id=\"evaluation-script\">Evaluation Script<\/h3>\n\n\n\n<ul class=\"wp-block-list\"><li><strong><a href=\"https:\/\/github.com\/TeMU-BSC\/distemist_evaluation_library\" data-type=\"URL\" data-id=\"https:\/\/github.com\/TeMU-BSC\/distemist_evaluation_library\">Official evaluation script<\/a><\/strong> (beta version). <\/li><\/ul>\n\n\n\n<h3 class=\"wp-block-heading\" id=\"word-embeddings\">Word embeddings<\/h3>\n\n\n\n<ul class=\"wp-block-list\"><li><strong>Spanish Medical Word Embeddings.<\/strong> Word embeddings generated from Spanish medical corpora. <a rel=\"noreferrer noopener\" href=\"https:\/\/doi.org\/10.5281\/zenodo.2542721\" target=\"_blank\">Download them from Zenodo.<\/a> <br>It can be used as a building block for clinical NLP systems used in Spanish texts.<\/li><\/ul>\n\n\n\n<h3 class=\"wp-block-heading\" id=\"baseline\">Baseline<\/h3>\n\n\n\n<p>Dictionary lookup based on Levenshtein distance. It looks for train and development annotations in the test set. <\/p>\n\n\n\n<h3 class=\"wp-block-heading\" id=\"linguistic-resources\">Linguistic Resources<\/h3>\n\n\n\n<ul class=\"wp-block-list\"><li><strong>CUTEXT.<\/strong> <a rel=\"noreferrer noopener\" href=\"https:\/\/github.com\/PlanTL-SANIDAD\/CUTEXT\" target=\"_blank\">See it on GitHub.<\/a><br>Medical term extraction tool. <br>It can be used to extract relevant medical terms from clinical cases.<\/li><li><strong>SPACCC POS Tagger.<\/strong> <a rel=\"noreferrer noopener\" href=\"https:\/\/zenodo.org\/record\/2560344\" target=\"_blank\">See it on Zenodo<\/a>.<br>Part Of Speech Tagger for Spanish medical domain corpus. <br>It can be used as a component of your system.<\/li><li><strong>NegEx-MES<\/strong>. <a rel=\"noreferrer noopener\" href=\"https:\/\/zenodo.org\/record\/2542567\" target=\"_blank\">See it on Zenodo.<\/a><br>A system for negation detection in Spanish clinical texts based on NegEx algorithm.<br>It can be used as a component of your system.<\/li><li><strong>Negation corpus<\/strong>.  <a rel=\"noreferrer noopener\" aria-label=\"See it on GitHub  (opens in a new tab)\" href=\"https:\/\/github.com\/Vicomtech\/NUBes-negation-uncertainty-biomedical-corpus\" target=\"_blank\">See it on GitHub <\/a><br>A Corpus of Negation and Uncertainty in Spanish Clinical Texts (and instructions to train the system).<\/li><li><strong>AbreMES-X.<\/strong> <a rel=\"noreferrer noopener\" href=\"https:\/\/zenodo.org\/record\/2542555\" target=\"_blank\">See it on Zenodo.<\/a><br>Software used to generate the Spanish Medical Abbreviation DataBase.<\/li><li><strong>AbreMES-DB.<\/strong> <a rel=\"noreferrer noopener\" href=\"https:\/\/zenodo.org\/record\/2207130\" target=\"_blank\">See it on Zenodo.<\/a><br>Spanish Medical Abbreviation DataBase.<br>It can be used to fine-tune your system.<\/li><li><strong>MeSpEn Glossaries<\/strong>. <a rel=\"noreferrer noopener\" href=\"https:\/\/zenodo.org\/record\/2205690\" target=\"_blank\">See it on Zenodo.<\/a><br>Repository of bilingual medical glossaries made by professional translators.<br>It can be used to fine-tune your system.<\/li><\/ul>\n\n\n\n<h3 class=\"wp-block-heading\" id=\"terminological-resources\">Terminological Resources<\/h3>\n\n\n\n<ul class=\"wp-block-list\"><li><strong>List of valid Snomed-CT codes. <\/strong>To be published<br><\/li><\/ul>\n\n\n\n<h3 class=\"wp-block-heading\" id=\"other-relevant-systems\">Other Relevant Systems<\/h3>\n\n\n\n<ul class=\"wp-block-list\"><li>Live demo of a NER for drug\/chemical\/gene in Spanish clinical texts, <a rel=\"noreferrer noopener\" href=\"http:\/\/espharmaner.texttechnologylab.org\/\" target=\"_blank\">here<\/a>.<\/li><li>NER for drug\/chemical\/gene with BERT on Spanish clinical texts, <a rel=\"noreferrer noopener\" href=\"https:\/\/github.com\/chaanim\/pharmaconer\" target=\"_blank\">here.<\/a><\/li><li>Alternative NER for drug\/chemical\/gene on Spanish clinical documents, <a rel=\"noreferrer noopener\" href=\"https:\/\/github.com\/texttechnologylab\/EsPharmaNER\" target=\"_blank\">here<\/a>.<\/li><\/ul>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>DISTEMIST gazetteer DISTEMIST gazetteer: contains main terms and synonyms from the relevant branches of Snomed-CT for the grounding of disease mentions. Relevant for NER and Entity linking. Find it on Zenodo. Evaluation Script Official evaluation script (beta version). Word embeddings Spanish Medical Word Embeddings. Word embeddings generated from Spanish medical corpora. Download them from Zenodo. [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[4],"tags":[],"class_list":["post-3979","post","type-post","status-publish","format-standard","hentry","category-data"],"_links":{"self":[{"href":"https:\/\/temu.bsc.es\/distemist\/wp-json\/wp\/v2\/posts\/3979","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/temu.bsc.es\/distemist\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/temu.bsc.es\/distemist\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/temu.bsc.es\/distemist\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/temu.bsc.es\/distemist\/wp-json\/wp\/v2\/comments?post=3979"}],"version-history":[{"count":4,"href":"https:\/\/temu.bsc.es\/distemist\/wp-json\/wp\/v2\/posts\/3979\/revisions"}],"predecessor-version":[{"id":4785,"href":"https:\/\/temu.bsc.es\/distemist\/wp-json\/wp\/v2\/posts\/3979\/revisions\/4785"}],"wp:attachment":[{"href":"https:\/\/temu.bsc.es\/distemist\/wp-json\/wp\/v2\/media?parent=3979"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/temu.bsc.es\/distemist\/wp-json\/wp\/v2\/categories?post=3979"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/temu.bsc.es\/distemist\/wp-json\/wp\/v2\/tags?post=3979"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}